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shinya yamanaka  (Addgene inc)


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    Structured Review

    Addgene inc shinya yamanaka
    Shinya Yamanaka, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 17 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/shinya+yamanaka/pMXs-DsRed+Express+(Plasmid+%2322724)/pm41398047-51-39-41
    Average 93 stars, based on 17 article reviews
    shinya yamanaka - by Bioz Stars, 2026-10
    93/100 stars

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    Transfection:

    Article Title: MSH2 is not required for either maintenance of DNA methylation or repeat contraction at the FMR1 locus in fragile X syndrome or the FXN locus in Friedreich's ataxia.
    Article Snippet: .. Cells were transfected with pX462-MSH2-dualgRNA and pCE-mp53DD, a gift from Shinya Yamanaka (Addgene plasmid # 41856; h t t p : / / n 2 t . n e t / a d d g e n e : 4 1 8 5 6 ) [72] using Lipofectamine STEM (Thermo Fisher Scientific, STEM00008) according to the manufacturer’s guidelines. .. Twenty-four hours after transfection, 1 μg/mL puromycin (Thermo Fisher Scientific, A11138-03) was added for 48 h to select for transfected cells.

    Plasmid Preparation:

    Article Title: MSH2 is not required for either maintenance of DNA methylation or repeat contraction at the FMR1 locus in fragile X syndrome or the FXN locus in Friedreich's ataxia.
    Article Snippet: .. Cells were transfected with pX462-MSH2-dualgRNA and pCE-mp53DD, a gift from Shinya Yamanaka (Addgene plasmid # 41856; h t t p : / / n 2 t . n e t / a d d g e n e : 4 1 8 5 6 ) [72] using Lipofectamine STEM (Thermo Fisher Scientific, STEM00008) according to the manufacturer’s guidelines. .. Twenty-four hours after transfection, 1 μg/mL puromycin (Thermo Fisher Scientific, A11138-03) was added for 48 h to select for transfected cells.

    Article Title: Generation of four iPSC lines from a family harboring a 1p36-35 haplotype linked with bipolar disorder and recurrent depressive disorder: Three-generation patients and a healthy sibling.
    Article Snippet: .. 1383D6 (HPS1006) was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan. pCXLE-hoct3/4-shp53-F, pCXLE-hSK, pCXLE-hUL, and pCXWBEBNA1 were gifts from Shinya Yamanaka (Addgene plasmid # 27077, 27078, 27080, and 37624). ..

    Article Title: SLAP controls mTORC2 integrity via UBE3C-mediated non-degradative mLST8 ubiquitination to suppress colorectal tumorigenesis.
    Article Snippet: Drugs: mTOR inhibitors KU-0063794, Temsilorimus (TS), and AZD2014 were from Selleckchem (USA); PP242/Torkinib (#T2414) was from TargetMOL. .. Vectors: pcDNA3 and retroviral pMX-pS-CESAR vectors expressing SLAPFlag, SLAP SH3*(P73L)-Flag, SLAP SH2*(R111E)-Flag, and SLAP SH3*SH2*Flag (a gift of A. Weiss, University of California, San Francisco, USA) and SLAP N32-Flag were described in [29]. pMXs-DsRed Express was a gift from Shinya Yamanaka (Addgene plasmid # 22724; www.addgene.org). .. Human RICTOR, RAPTOR, mTOR, SIN1, LST8, TTI1 and TEL2 cDNA was obtained from an ORFeome library (Montpellier genomic platform, GENOMIX, www.mgc.cnrs.fr) and subcloned into HA and Flag-tagged form in pcDNA3 and retroviral pMX-pS-CESAR expression vectors.

    Article Title: Gene electrotransfer with flow-through microchannel and lower alternating voltage generated induced pluripotent cells from human lymphoblastoid cell lines
    Article Snippet: .. The episomal plasmid vector pCXLE-EGFP, used to express GFP, was gifted by Shinya Yamanaka of Addgene (Addgene plasmid # 27082; http://n2t.net/addgene:27082 ) [ ]. ..

    Article Title: Generation of a FAM189A2/ENTREP1 knockout human induced pluripotent stem cell line using CRISPR/Cas9 technology
    Article Snippet: .. The cell culture system used Feeder free medium / mTeSR1TM Type of the Genetic Modification Induced deletions by CRISP Cas9 in ENTREP1 gene Associated disease Cancer, cardiovascular diseases Gene/locus modified in the reported transgenic line ENTREP1 gene.9q21.2 NM_001347995.2:c.554_555del and NM_001347995.2:c.553_572del lead to premature stop codons, NP_001334924.1:p.Phe185CysfsTer8 and NP_001334924.1:p.Phe185ValfsTer2 Method of modification / user-customisable nucleases (UCN) used, the resource used for design optimisation CRISPR/Cas9 induced non-homologous end-joining (NHEJ) User-customisable nuclease (UCN) delivery method Electroporation with an Amaxa 4D-Nucleofector (Lonza) All double-stranded DNA genetic material molecules introduced into the cells pSpCas9(BB)-2A-GFP (pX458) was a gift from Feng Zhang (Addgene plasmid # 48,138; https://n2t.net/addgene:48138; RRID:Addgene_48138) pCX-cMyc was a gift from Shinya Yamanaka (Addgene plasmid #19772; https://n2t.net/addgene:19772; RRID: Addgene_19772) pCXLE-hOCT3/4 was a gift from Shinya Yamanaka (Addgene plasmid #27076; https://n2t.net/addgene:27076; RRID: Addgene_27076) pCXLE-hSK was a gift from Shinya Yamanaka (Addgene plasmid #27078; https://n2t.net/addgene:27078; RRID: Addgene_27078) Evidence of the absence of random integration of any plasmids or DS DNA introduced into the cells. ..

    Modification:

    Article Title: Null and missense mutations of ERI1 cause a recessive phenotypic dichotomy in humans.
    Article Snippet: .. Note The Americ ming of LCLs was performed with episomes as previously described with a minor modification.27 Briefly, LCLs were electroporated with four episomal vectors (pCXLE-hOCT3/4-shp53-F, pCXLE-hSK, pCXLE-hUL, and pCXWB-EBNA1), which were gifts from Shinya Yamanaka (Addgene #27077, #27078, #27080, and #37624).28 The nucleofected LCLs were seeded on iMatrix-511 (Nippi)-coated plates containing TeSR-E7 reprogramming media (STEMCELL Technology) without feeder cells. .. After 18–21 days, iPSC colonies were manually picked and expanded in mTeSR-1 maintenance media (STEMCELL Technologies).27 The iPSCs were routinely passaged every 5–7 days at a ratio of 1:6 with TrypLE (Gibco Life Technologies).

    Article Title: Generation of a FAM189A2/ENTREP1 knockout human induced pluripotent stem cell line using CRISPR/Cas9 technology
    Article Snippet: .. The cell culture system used Feeder free medium / mTeSR1TM Type of the Genetic Modification Induced deletions by CRISP Cas9 in ENTREP1 gene Associated disease Cancer, cardiovascular diseases Gene/locus modified in the reported transgenic line ENTREP1 gene.9q21.2 NM_001347995.2:c.554_555del and NM_001347995.2:c.553_572del lead to premature stop codons, NP_001334924.1:p.Phe185CysfsTer8 and NP_001334924.1:p.Phe185ValfsTer2 Method of modification / user-customisable nucleases (UCN) used, the resource used for design optimisation CRISPR/Cas9 induced non-homologous end-joining (NHEJ) User-customisable nuclease (UCN) delivery method Electroporation with an Amaxa 4D-Nucleofector (Lonza) All double-stranded DNA genetic material molecules introduced into the cells pSpCas9(BB)-2A-GFP (pX458) was a gift from Feng Zhang (Addgene plasmid # 48,138; https://n2t.net/addgene:48138; RRID:Addgene_48138) pCX-cMyc was a gift from Shinya Yamanaka (Addgene plasmid #19772; https://n2t.net/addgene:19772; RRID: Addgene_19772) pCXLE-hOCT3/4 was a gift from Shinya Yamanaka (Addgene plasmid #27076; https://n2t.net/addgene:27076; RRID: Addgene_27076) pCXLE-hSK was a gift from Shinya Yamanaka (Addgene plasmid #27078; https://n2t.net/addgene:27078; RRID: Addgene_27078) Evidence of the absence of random integration of any plasmids or DS DNA introduced into the cells. ..

    Retroviral:

    Article Title: SLAP controls mTORC2 integrity via UBE3C-mediated non-degradative mLST8 ubiquitination to suppress colorectal tumorigenesis.
    Article Snippet: Drugs: mTOR inhibitors KU-0063794, Temsilorimus (TS), and AZD2014 were from Selleckchem (USA); PP242/Torkinib (#T2414) was from TargetMOL. .. Vectors: pcDNA3 and retroviral pMX-pS-CESAR vectors expressing SLAPFlag, SLAP SH3*(P73L)-Flag, SLAP SH2*(R111E)-Flag, and SLAP SH3*SH2*Flag (a gift of A. Weiss, University of California, San Francisco, USA) and SLAP N32-Flag were described in [29]. pMXs-DsRed Express was a gift from Shinya Yamanaka (Addgene plasmid # 22724; www.addgene.org). .. Human RICTOR, RAPTOR, mTOR, SIN1, LST8, TTI1 and TEL2 cDNA was obtained from an ORFeome library (Montpellier genomic platform, GENOMIX, www.mgc.cnrs.fr) and subcloned into HA and Flag-tagged form in pcDNA3 and retroviral pMX-pS-CESAR expression vectors.

    Expressing:

    Article Title: SLAP controls mTORC2 integrity via UBE3C-mediated non-degradative mLST8 ubiquitination to suppress colorectal tumorigenesis.
    Article Snippet: Drugs: mTOR inhibitors KU-0063794, Temsilorimus (TS), and AZD2014 were from Selleckchem (USA); PP242/Torkinib (#T2414) was from TargetMOL. .. Vectors: pcDNA3 and retroviral pMX-pS-CESAR vectors expressing SLAPFlag, SLAP SH3*(P73L)-Flag, SLAP SH2*(R111E)-Flag, and SLAP SH3*SH2*Flag (a gift of A. Weiss, University of California, San Francisco, USA) and SLAP N32-Flag were described in [29]. pMXs-DsRed Express was a gift from Shinya Yamanaka (Addgene plasmid # 22724; www.addgene.org). .. Human RICTOR, RAPTOR, mTOR, SIN1, LST8, TTI1 and TEL2 cDNA was obtained from an ORFeome library (Montpellier genomic platform, GENOMIX, www.mgc.cnrs.fr) and subcloned into HA and Flag-tagged form in pcDNA3 and retroviral pMX-pS-CESAR expression vectors.

    Cell Culture:

    Article Title: Generation of a FAM189A2/ENTREP1 knockout human induced pluripotent stem cell line using CRISPR/Cas9 technology
    Article Snippet: .. The cell culture system used Feeder free medium / mTeSR1TM Type of the Genetic Modification Induced deletions by CRISP Cas9 in ENTREP1 gene Associated disease Cancer, cardiovascular diseases Gene/locus modified in the reported transgenic line ENTREP1 gene.9q21.2 NM_001347995.2:c.554_555del and NM_001347995.2:c.553_572del lead to premature stop codons, NP_001334924.1:p.Phe185CysfsTer8 and NP_001334924.1:p.Phe185ValfsTer2 Method of modification / user-customisable nucleases (UCN) used, the resource used for design optimisation CRISPR/Cas9 induced non-homologous end-joining (NHEJ) User-customisable nuclease (UCN) delivery method Electroporation with an Amaxa 4D-Nucleofector (Lonza) All double-stranded DNA genetic material molecules introduced into the cells pSpCas9(BB)-2A-GFP (pX458) was a gift from Feng Zhang (Addgene plasmid # 48,138; https://n2t.net/addgene:48138; RRID:Addgene_48138) pCX-cMyc was a gift from Shinya Yamanaka (Addgene plasmid #19772; https://n2t.net/addgene:19772; RRID: Addgene_19772) pCXLE-hOCT3/4 was a gift from Shinya Yamanaka (Addgene plasmid #27076; https://n2t.net/addgene:27076; RRID: Addgene_27076) pCXLE-hSK was a gift from Shinya Yamanaka (Addgene plasmid #27078; https://n2t.net/addgene:27078; RRID: Addgene_27078) Evidence of the absence of random integration of any plasmids or DS DNA introduced into the cells. ..

    Transgenic Assay:

    Article Title: Generation of a FAM189A2/ENTREP1 knockout human induced pluripotent stem cell line using CRISPR/Cas9 technology
    Article Snippet: .. The cell culture system used Feeder free medium / mTeSR1TM Type of the Genetic Modification Induced deletions by CRISP Cas9 in ENTREP1 gene Associated disease Cancer, cardiovascular diseases Gene/locus modified in the reported transgenic line ENTREP1 gene.9q21.2 NM_001347995.2:c.554_555del and NM_001347995.2:c.553_572del lead to premature stop codons, NP_001334924.1:p.Phe185CysfsTer8 and NP_001334924.1:p.Phe185ValfsTer2 Method of modification / user-customisable nucleases (UCN) used, the resource used for design optimisation CRISPR/Cas9 induced non-homologous end-joining (NHEJ) User-customisable nuclease (UCN) delivery method Electroporation with an Amaxa 4D-Nucleofector (Lonza) All double-stranded DNA genetic material molecules introduced into the cells pSpCas9(BB)-2A-GFP (pX458) was a gift from Feng Zhang (Addgene plasmid # 48,138; https://n2t.net/addgene:48138; RRID:Addgene_48138) pCX-cMyc was a gift from Shinya Yamanaka (Addgene plasmid #19772; https://n2t.net/addgene:19772; RRID: Addgene_19772) pCXLE-hOCT3/4 was a gift from Shinya Yamanaka (Addgene plasmid #27076; https://n2t.net/addgene:27076; RRID: Addgene_27076) pCXLE-hSK was a gift from Shinya Yamanaka (Addgene plasmid #27078; https://n2t.net/addgene:27078; RRID: Addgene_27078) Evidence of the absence of random integration of any plasmids or DS DNA introduced into the cells. ..

    CRISPR:

    Article Title: Generation of a FAM189A2/ENTREP1 knockout human induced pluripotent stem cell line using CRISPR/Cas9 technology
    Article Snippet: .. The cell culture system used Feeder free medium / mTeSR1TM Type of the Genetic Modification Induced deletions by CRISP Cas9 in ENTREP1 gene Associated disease Cancer, cardiovascular diseases Gene/locus modified in the reported transgenic line ENTREP1 gene.9q21.2 NM_001347995.2:c.554_555del and NM_001347995.2:c.553_572del lead to premature stop codons, NP_001334924.1:p.Phe185CysfsTer8 and NP_001334924.1:p.Phe185ValfsTer2 Method of modification / user-customisable nucleases (UCN) used, the resource used for design optimisation CRISPR/Cas9 induced non-homologous end-joining (NHEJ) User-customisable nuclease (UCN) delivery method Electroporation with an Amaxa 4D-Nucleofector (Lonza) All double-stranded DNA genetic material molecules introduced into the cells pSpCas9(BB)-2A-GFP (pX458) was a gift from Feng Zhang (Addgene plasmid # 48,138; https://n2t.net/addgene:48138; RRID:Addgene_48138) pCX-cMyc was a gift from Shinya Yamanaka (Addgene plasmid #19772; https://n2t.net/addgene:19772; RRID: Addgene_19772) pCXLE-hOCT3/4 was a gift from Shinya Yamanaka (Addgene plasmid #27076; https://n2t.net/addgene:27076; RRID: Addgene_27076) pCXLE-hSK was a gift from Shinya Yamanaka (Addgene plasmid #27078; https://n2t.net/addgene:27078; RRID: Addgene_27078) Evidence of the absence of random integration of any plasmids or DS DNA introduced into the cells. ..

    Non-Homologous End Joining:

    Article Title: Generation of a FAM189A2/ENTREP1 knockout human induced pluripotent stem cell line using CRISPR/Cas9 technology
    Article Snippet: .. The cell culture system used Feeder free medium / mTeSR1TM Type of the Genetic Modification Induced deletions by CRISP Cas9 in ENTREP1 gene Associated disease Cancer, cardiovascular diseases Gene/locus modified in the reported transgenic line ENTREP1 gene.9q21.2 NM_001347995.2:c.554_555del and NM_001347995.2:c.553_572del lead to premature stop codons, NP_001334924.1:p.Phe185CysfsTer8 and NP_001334924.1:p.Phe185ValfsTer2 Method of modification / user-customisable nucleases (UCN) used, the resource used for design optimisation CRISPR/Cas9 induced non-homologous end-joining (NHEJ) User-customisable nuclease (UCN) delivery method Electroporation with an Amaxa 4D-Nucleofector (Lonza) All double-stranded DNA genetic material molecules introduced into the cells pSpCas9(BB)-2A-GFP (pX458) was a gift from Feng Zhang (Addgene plasmid # 48,138; https://n2t.net/addgene:48138; RRID:Addgene_48138) pCX-cMyc was a gift from Shinya Yamanaka (Addgene plasmid #19772; https://n2t.net/addgene:19772; RRID: Addgene_19772) pCXLE-hOCT3/4 was a gift from Shinya Yamanaka (Addgene plasmid #27076; https://n2t.net/addgene:27076; RRID: Addgene_27076) pCXLE-hSK was a gift from Shinya Yamanaka (Addgene plasmid #27078; https://n2t.net/addgene:27078; RRID: Addgene_27078) Evidence of the absence of random integration of any plasmids or DS DNA introduced into the cells. ..

    Electroporation:

    Article Title: Generation of a FAM189A2/ENTREP1 knockout human induced pluripotent stem cell line using CRISPR/Cas9 technology
    Article Snippet: .. The cell culture system used Feeder free medium / mTeSR1TM Type of the Genetic Modification Induced deletions by CRISP Cas9 in ENTREP1 gene Associated disease Cancer, cardiovascular diseases Gene/locus modified in the reported transgenic line ENTREP1 gene.9q21.2 NM_001347995.2:c.554_555del and NM_001347995.2:c.553_572del lead to premature stop codons, NP_001334924.1:p.Phe185CysfsTer8 and NP_001334924.1:p.Phe185ValfsTer2 Method of modification / user-customisable nucleases (UCN) used, the resource used for design optimisation CRISPR/Cas9 induced non-homologous end-joining (NHEJ) User-customisable nuclease (UCN) delivery method Electroporation with an Amaxa 4D-Nucleofector (Lonza) All double-stranded DNA genetic material molecules introduced into the cells pSpCas9(BB)-2A-GFP (pX458) was a gift from Feng Zhang (Addgene plasmid # 48,138; https://n2t.net/addgene:48138; RRID:Addgene_48138) pCX-cMyc was a gift from Shinya Yamanaka (Addgene plasmid #19772; https://n2t.net/addgene:19772; RRID: Addgene_19772) pCXLE-hOCT3/4 was a gift from Shinya Yamanaka (Addgene plasmid #27076; https://n2t.net/addgene:27076; RRID: Addgene_27076) pCXLE-hSK was a gift from Shinya Yamanaka (Addgene plasmid #27078; https://n2t.net/addgene:27078; RRID: Addgene_27078) Evidence of the absence of random integration of any plasmids or DS DNA introduced into the cells. ..



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